Components init replaced to the Bootstrap.cs as an autofac container builder. And there is a lot of other edits. for better flexability.

Pores/App.xaml.cs

@@ -1,16 +1,7 @@
-using System;
-using System.Collections.Generic;
-using System.Configuration;
-using System.Data;
-using System.Linq;
-using System.Threading.Tasks;
-using System.Windows;
+using System.Windows;
 
 namespace Pores
 {
-    /// <summary>
-    /// Interaction logic for App.xaml
-    /// </summary>
     public partial class App : Application
     {
     }

Pores/Bootstrap.cs

@@ -0,0 +1,53 @@
+using Autofac;
+using Pores.Controllers;
+using Pores.Interfaces;
+using Pores.Models;
+using Pores.Models.Localizations;
+using System;
+using System.Collections.Generic;
+using System.Collections.ObjectModel;
+using System.Linq;
+using System.Text;
+using System.Threading.Tasks;
+
+namespace Pores
+{
+    public class Bootstrap
+    {
+        public IContainer CompileContainer()
+        {
+            ContainerBuilder build = new ContainerBuilder();
+
+            build
+                .Register(c => new Material())
+                .As<Material>()
+                .SingleInstance();
+
+            build
+                .Register(c => new ObservableCollection<IPoreLocalization>() { new NormalLocalization(c.Resolve<Material>()) })
+                .As<IEnumerable<IPoreLocalization>>()
+                .SingleInstance();
+
+            build
+                .RegisterType<PoreGenerator>()
+                .As<IPoreGenerator>()
+                .SingleInstance();
+
+            build
+                .RegisterType<BatchGenerator>()
+                .AsSelf();
+
+            build
+                .RegisterType<PoresToFileSaver>()
+                .AsSelf();
+
+            build
+                .RegisterType<MainWindowViewModel>()
+                .AsSelf()
+                .SingleInstance();
+
+
+            return build.Build();
+        }
+    }
+}

Pores/Controllers/BatchGenerator.cs

@@ -10,23 +10,32 @@ namespace Pores.Controllers
 {
     public class BatchGenerator
     {
-        public PoresToFileSaver batchSaver = new PoresToFileSaver("batch.log");
+        public PoresToFileSaver BatchSaver { get; set; }
+        public Material Material { get; set; }
 
-        public Material Material { get; }
-        public IList<Pore> Pores { get; }
-
-        public BatchGenerator(Material material, IList<Pore> pores)
+        public BatchGenerator(Material material, PoresToFileSaver batchSaver)
         {
             Material = material;
-            Pores = pores;
+            BatchSaver = batchSaver;
         }
 
-        public void GenerateBatch(Point3D center, double width, double depth)
+        public void GenerateBatch(BatchPoint bp, IList<Pore> pores, int index = 0)
+        {
+            var p1 = new Point3D()
+            {
+                X = bp.Center.X - bp.Width / 2,
+                Y = bp.Center.Y - bp.Width / 2,
+                Z = Math.Abs(bp.Center.Z - bp.Depth)
+            };
+            var p2 = new Point3D()
             {
-            var p1 = new Point3D() { X = center.X - width / 2, Y = center.Y - width / 2, Z = Math.Abs(center.Z - depth) };
-            var p2 = new Point3D() { X = center.X + width / 2, Y = center.Y + width / 2, Z = center.Z };
-            batchSaver.FileName = "batch_" + DateTime.Now.ToString("yyyyMMdd_HHmmss") + ".log";
-            batchSaver.Save(Pores.Where(p => IsPointInsideOfCube(p.Point, p1, p2)));
+                X = bp.Center.X + bp.Width / 2,
+                Y = bp.Center.Y + bp.Width / 2,
+                Z = bp.Center.Z
+            };
+            BatchSaver.FileName = $"batch_${index.ToString()}_${DateTime.Now.ToString("yyyyMMdd_HHmmss")}.log";
+            BatchSaver.FileName = string.Format("batch_{0}_{1}.log", index.ToString(), DateTime.Now.ToString("yyyyMMdd_HHmmss"));
+            BatchSaver.Save(pores.Where(p => IsPointInsideOfCube(p.Point, p1, p2)));
         }
        
         public bool IsPointInsideOfCube(Point3D p, Point3D vertex1, Point3D vertex2)

Pores/Controllers/ModelGenerationController.cs

@@ -1,24 +0,0 @@
-using Pores.Helpers;
-using Pores.Interfaces;
-using Pores.Models;
-using System.Collections.Generic;
-
-namespace Pores.Controllers
-{
-    public class ModelGenerationController : PropertyChangedClass
-    {
-        public IPoreLocalization PoresLocalization { get; set; }
-        public Material MaterialInstance { get; set; }
-        public IList<Pore> PoreCoordinates { get; set; }
-
-        public ModelGenerationController(IPoreLocalization poresLocalization)
-        {
-            PoresLocalization = poresLocalization;
-        }
-
-        public void GeneratePores()
-        {
-            PoreCoordinates = PoresLocalization.GetLocalization();
-        }
-    }
-}

Pores/Controllers/PoreGenerator.cs

@@ -0,0 +1,24 @@
+using Pores.Helpers;
+using Pores.Interfaces;
+using Pores.Models;
+using System.Collections.Generic;
+
+namespace Pores.Controllers
+{
+    public class PoreGenerator : PropertyChangedClass, IPoreGenerator
+    {
+        public IPoreLocalization PoresLocalization { get; set; }
+        public Material CurrentMaterial { get; set; }
+        public IList<Pore> Pores { get; set; }
+
+        public PoreGenerator(Material currentMaterial)
+        {
+            CurrentMaterial = currentMaterial;
+        }
+
+        public void Generate(IPoreLocalization localization)
+        {
+            Pores = localization.GetLocalization();
+        }
+    }
+}

Pores/Controllers/PoresToFileSaver.cs

@@ -39,7 +39,7 @@ namespace Pores.Controllers
             }
         }
 
-        public PoresToFileSaver(string fileName)
+        public PoresToFileSaver(string fileName = "not_defined")
         {
             FileName = fileName;
         }

Pores/Interfaces/IPoreGenerator.cs

@@ -0,0 +1,11 @@
+using Pores.Models;
+using System.Collections.Generic;
+
+namespace Pores.Interfaces
+{
+    public interface IPoreGenerator
+    {
+        IList<Pore> Pores { get; set; }
+        void Generate(IPoreLocalization localization);
+    }
+}

Pores/MainWindow.xaml

@@ -23,20 +23,20 @@
         <StackPanel VerticalAlignment="Center" Grid.Column="2">
             <TextBlock Text="Параметры модели"/>
             <TextBlock Text="Ширина: "/>
-            <TextBox Text="{Binding Material.Width}"/>
+            <TextBox Text="{Binding CurrentMaterial.Width}"/>
             <TextBlock Text="Глубина: "/>
-            <TextBox Text="{Binding Material.Depth}"/>
+            <TextBox Text="{Binding CurrentMaterial.Depth}"/>
             <TextBlock Text="Высота: "/>
-            <TextBox Text="{Binding Material.Height}"/>
+            <TextBox Text="{Binding CurrentMaterial.Height}"/>
             <TextBlock Text="Разрешение каждого из трех измерений (общее количество точек = n^3): " TextWrapping="Wrap"/>
-            <TextBox Text="{Binding Material.NumberOfPores}"/>
+            <TextBox Text="{Binding CurrentMaterial.NumberOfPores}"/>
         </StackPanel>
 
 
         <StackPanel VerticalAlignment="Center" Grid.Column="2" Grid.Row="2" Grid.RowSpan="2" Margin="20 0">
             <TextBlock Text="Результаты работы"/>
             <TextBlock Text="Количество пор: "/>
-            <TextBox Text="{Binding GenController.PoreCoordinates.Count, Mode=OneWay}" IsEnabled="False"/>
+            <TextBox Text="{Binding PoreGeneratorInstance.PoreCoordinates.Count, Mode=OneWay}" IsEnabled="False"/>
         </StackPanel>
 
         <StackPanel Grid.Column="2" Grid.Row="1" VerticalAlignment="Center">
@@ -66,15 +66,15 @@
         <StackPanel VerticalAlignment="Center" Grid.Column="1">
             <TextBlock Text="Параметры единичной выборки: "/>
             <TextBlock Text="Координаты центра (Х): "/>
-            <TextBox Text="{Binding BatchCenter.X}"/>
+            <TextBox Text="{Binding BatchPoint.Center.X}"/>
             <TextBlock Text="Координаты центра (Y): "/>
-            <TextBox Text="{Binding BatchCenter.Y}"/>
+            <TextBox Text="{Binding BatchPoint.Center.Y}"/>
             <TextBlock Text="Координаты центра (Z): "/>
-            <TextBox Text="{Binding BatchCenter.Z}"/>
+            <TextBox Text="{Binding BatchPoint.Center.Z}"/>
             <TextBlock Text="Ширина: "/>
-            <TextBox Text="{Binding BatchWidth}"/>
+            <TextBox Text="{Binding BatchPoint.Width}"/>
             <TextBlock Text="Глубина:"/>
-            <TextBox Text="{Binding BatchDepth}"/>
+            <TextBox Text="{Binding BatchPoint.Depth}"/>
         </StackPanel>
         
         

Pores/MainWindow.xaml.cs

@@ -1,7 +1,5 @@
-using Pores.Controllers;
-using Pores.Interfaces;
-using Pores.Models;
-using Pores.Models.Localizations;
+
+using Autofac;
 using System.Windows;
 
 namespace Pores
@@ -10,7 +8,8 @@ namespace Pores
     {
         public MainWindow()
         {
-            DataContext = new MainWindowViewModel();
+            var c = new Bootstrap().CompileContainer();
+            DataContext = c.Resolve<MainWindowViewModel>();
             InitializeComponent();
         }
     }

Pores/MainWindowViewModel.cs

@@ -1,56 +1,69 @@
 using Pores.Controllers;
 using Pores.Interfaces;
 using Pores.Models;
-using Pores.Models.Localizations;
 using Pores.Helpers;
 using System.Windows.Input;
-using System.Collections.ObjectModel;
+using System.Collections.Generic;
+using System;
 
 namespace Pores
 {
     public class MainWindowViewModel : PropertyChangedClass
     {
-        public Material Material { get; set; } = new Material();
+        public Material CurrentMaterial { get; set; }
+        public IEnumerable<IPoreLocalization> Localizations { get; set; }
+
         public IPoreLocalization SelectedLocalization { get; set; }
-        public ModelGenerationController GenController { get; set; }
-        public ObservableCollection<IPoreLocalization> Localizations { get; set; }
-        public PoresToFileSaver saveController = new PoresToFileSaver("output.log");
+        public IPoreGenerator PoreGeneratorInstance { get; set; }
+        public BatchGenerator BatchGenerator { get; }
+
+        private PoresToFileSaver PoreSaver;
 
         public int NumberOfPores { get; set; }
         public ICommand GeneratePoresCommand { get; set; }
         public ICommand SaveToFileCommand { get; set; }
         public ICommand GenAndSaveBatchCommand { get; set; }
 
-        public double BatchWidth { get; set; }
-        public double BatchDepth { get; set; }
-        public Point3D BatchCenter { get; set; } = new Point3D();
+        public BatchPoint BatchPoint { get; set; } = new BatchPoint();
 
-        public MainWindowViewModel()
+        public MainWindowViewModel(
+            Material material, 
+            IEnumerable<IPoreLocalization> localizations, 
+            IPoreGenerator poreGenerator,
+            PoresToFileSaver poreSaver,
+            BatchGenerator batchGenerator)
         {
-            Localizations = new ObservableCollection<IPoreLocalization>
-            {
-                new NormalLocalization(Material),
-            };
+            CurrentMaterial = material;
+            Localizations = localizations;
+            PoreGeneratorInstance = poreGenerator;
+            PoreSaver = poreSaver;
+            BatchGenerator = batchGenerator;
             GeneratePoresCommand = new RelayCommand(StartGeneration, () => SelectedLocalization != null);
-            SaveToFileCommand = new RelayCommand(Save, () => GenController?.PoreCoordinates?.Count > 0);
-            GenAndSaveBatchCommand = new RelayCommand(CreateBatch, () => GenController?.PoreCoordinates?.Count > 0);
+            SaveToFileCommand = new RelayCommand(Save, () => PoreGeneratorInstance?.Pores?.Count > 0);
+            GenAndSaveBatchCommand = new RelayCommand(CreateBatch, () => PoreGeneratorInstance?.Pores?.Count > 0);
         }
         
         public void StartGeneration()
         {
-            GenController = new ModelGenerationController(SelectedLocalization);
-            GenController.GeneratePores();
+            PoreGeneratorInstance.Generate(SelectedLocalization);
         }
 
         public void Save()
         {
-            saveController.Save(GenController.PoreCoordinates);
+            PoreSaver.FileName = string.Format(
+                "model_w{0}_d{1}_h{2}_n{3}_{4}.mdl", 
+                CurrentMaterial.Width, 
+                CurrentMaterial.Depth, 
+                CurrentMaterial.Height, 
+                CurrentMaterial.NumberOfPores,
+                DateTime.Now.ToString("yyyyMMdd_HHmmss"));
+
+            PoreSaver.Save(PoreGeneratorInstance.Pores);
         }
 
         public void CreateBatch()
         {
-            var batchGenerator = new BatchGenerator(Material, GenController.PoreCoordinates);
-            batchGenerator.GenerateBatch(BatchCenter, BatchWidth, BatchDepth);
+            BatchGenerator.GenerateBatch(BatchPoint, PoreGeneratorInstance.Pores);
         }
     }
 }

Pores/Models/BatchPoint.cs

@@ -0,0 +1,11 @@
+using Pores.Helpers;
+
+namespace Pores.Models
+{
+    public class BatchPoint : PropertyChangedClass
+    {
+        public Point3D Center { get; set; } = new Point3D();
+        public double Width { get; set; }
+        public double Depth { get; set; }
+    }
+}

Pores/Models/Material.cs

@@ -4,7 +4,6 @@ namespace Pores.Models
 {
     public class Material : PropertyChangedClass
     {
-        public Point3D GetCoordinate { get; set; }
         public double Height { get; set; }
         public double Width { get; set; }
         public double Depth { get; set; }

Pores/Pores.csproj

@@ -39,6 +39,9 @@
     <WarningLevel>4</WarningLevel>
   </PropertyGroup>
   <ItemGroup>
+    <Reference Include="Autofac, Version=4.8.1.0, Culture=neutral, PublicKeyToken=17863af14b0044da, processorArchitecture=MSIL">
+      <HintPath>..\packages\Autofac.4.8.1\lib\net45\Autofac.dll</HintPath>
+    </Reference>
     <Reference Include="Costura, Version=3.2.1.0, Culture=neutral, PublicKeyToken=9919ef960d84173d, processorArchitecture=MSIL">
       <HintPath>..\packages\Costura.Fody.3.2.1\lib\net40\Costura.dll</HintPath>
     </Reference>
@@ -76,14 +79,17 @@
       <DependentUpon>App.xaml</DependentUpon>
       <SubType>Code</SubType>
     </Compile>
+    <Compile Include="Bootstrap.cs" />
     <Compile Include="Controllers\BaseSaveController.cs" />
     <Compile Include="Controllers\BatchGenerator.cs" />
     <Compile Include="Controllers\PoresToFileSaver.cs" />
-    <Compile Include="Controllers\ModelGenerationController.cs" />
+    <Compile Include="Controllers\PoreGenerator.cs" />
     <Compile Include="Helpers\PropertyChanged.cs" />
     <Compile Include="Helpers\RelayCommand.cs" />
-    <Compile Include="Interfaces\IPoresLocalization.cs" />
+    <Compile Include="Interfaces\IPoreGenerator.cs" />
+    <Compile Include="Interfaces\IPoreLocalization.cs" />
     <Compile Include="MainWindowViewModel.cs" />
+    <Compile Include="Models\BatchPoint.cs" />
     <Compile Include="Models\Point.cs" />
     <Compile Include="Models\Point2D.cs" />
     <Compile Include="Models\Point3D.cs" />

Pores/packages.config

@@ -1,5 +1,6 @@
 <?xml version="1.0" encoding="utf-8"?>
 <packages>
+  <package id="Autofac" version="4.8.1" targetFramework="net461" />
   <package id="Costura.Fody" version="3.2.1" targetFramework="net461" />
   <package id="Fody" version="3.3.3" targetFramework="net461" developmentDependency="true" />
   <package id="Newtonsoft.Json" version="12.0.1" targetFramework="net461" />